Detailed information of SNP:
|
SNP ID:
sf0414198519(Gbrowse)
Chromosome: chr04 Position: 14198519 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.51% | 34.49% |
| All Indica | 798 | 82.21% | 17.79% |
| All Japonica | 497 | 33.40% | 66.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414198519 | A->G | INTERGENIC | None |