Detailed information of SNP:



SNP ID: sf0414198519(Gbrowse)

Chromosome: chr04

Position: 14198519
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 65.51% 34.49%
All Indica798 82.21% 17.79%
All Japonica497 33.40% 66.60%
Aus67 98.51% 1.49%
Indica I375 66.93% 33.07%
Indica II213 99.06% 0.94%
Indica Intermediate210 92.38% 7.62%
Temperate Japonica335 10.45% 89.55%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 58.82% 41.18%
Group VI/Aromatic14 64.29% 35.71%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0414198519 A->G INTERGENIC None