Detailed information of SNP:
|
SNP ID:
sf0414198677(Gbrowse)
Chromosome: chr04 Position: 14198677 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.34% | 35.66% |
| All Indica | 798 | 57.39% | 42.61% |
| All Japonica | 495 | 70.91% | 29.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 57.07% | 42.93% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 92 | 4.35% | 95.65% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414198677 | C->T | INTERGENIC | None |