Detailed information of SNP:
|
SNP ID:
sf0414198694(Gbrowse)
Chromosome: chr04 Position: 14198694 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 64.17% | 35.83% |
| All Indica | 796 | 77.76% | 22.24% |
| All Japonica | 496 | 36.49% | 63.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 66.94% | 33.06% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 14.37% | 85.63% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414198694 | T->C | INTERGENIC | None |