Detailed information of SNP:



SNP ID: sf0414199791(Gbrowse)

Chromosome: chr04

Position: 14199791
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1414 70.86% 29.14%
All Indica795 58.36% 41.64%
All Japonica496 86.90% 13.10%
Aus67 98.51% 1.49%
Indica I375 57.33% 42.67%
Indica II209 67.46% 32.54%
Indica Intermediate211 51.18% 48.82%
Temperate Japonica335 94.03% 5.97%
Tropical Japonica94 82.98% 17.02%
Japonica Intermediate67 56.72% 43.28%
Group VI/Aromatic14 57.14% 42.86%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0414199791 T->C INTERGENIC None