Detailed information of SNP:
|
SNP ID:
sf0414199791(Gbrowse)
Chromosome: chr04 Position: 14199791 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 70.86% | 29.14% |
| All Indica | 795 | 58.36% | 41.64% |
| All Japonica | 496 | 86.90% | 13.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 57.33% | 42.67% |
| Indica II | 209 | 67.46% | 32.54% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414199791 | T->C | INTERGENIC | None |