Detailed information of SNP:
|
SNP ID:
sf0414202035(Gbrowse)
Chromosome: chr04 Position: 14202035 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 58.16% | 41.84% |
| All Indica | 795 | 77.61% | 22.39% |
| All Japonica | 497 | 20.93% | 79.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 67.02% | 32.98% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414202035 | T->C | INTERGENIC | None |