Detailed information of SNP:



SNP ID: sf0414204160(Gbrowse)

Chromosome: chr04

Position: 14204160
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 70.33% 29.67%
All Indica794 67.38% 32.62%
All Japonica495 71.31% 28.69%
Aus67 98.51% 1.49%
Indica I373 61.93% 38.07%
Indica II212 85.85% 14.15%
Indica Intermediate209 58.37% 41.63%
Temperate Japonica334 93.41% 6.59%
Tropical Japonica93 8.60% 91.40%
Japonica Intermediate68 48.53% 51.47%
Group VI/Aromatic14 50.00% 50.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0414204160 C->T INTERGENIC None