Detailed information of SNP:
SNP ID:
sf0414204160(Gbrowse)
Chromosome: chr04 Position: 14204160 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1412 | 70.33% | 29.67% |
All Indica | 794 | 67.38% | 32.62% |
All Japonica | 495 | 71.31% | 28.69% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 373 | 61.93% | 38.07% |
Indica II | 212 | 85.85% | 14.15% |
Indica Intermediate | 209 | 58.37% | 41.63% |
Temperate Japonica | 334 | 93.41% | 6.59% |
Tropical Japonica | 93 | 8.60% | 91.40% |
Japonica Intermediate | 68 | 48.53% | 51.47% |
Group VI/Aromatic | 14 | 50.00% | 50.00% |
Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0414204160 | C->T | INTERGENIC | None |