Detailed information of SNP:
|
SNP ID:
sf0414206393(Gbrowse)
Chromosome: chr04 Position: 14206393 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 90.98% | 9.02% |
| All Indica | 772 | 99.22% | 0.78% |
| All Japonica | 463 | 76.03% | 23.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 99.72% | 0.28% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 201 | 98.01% | 1.99% |
| Temperate Japonica | 315 | 95.56% | 4.44% |
| Tropical Japonica | 89 | 10.11% | 89.89% |
| Japonica Intermediate | 59 | 71.19% | 28.81% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414206393 | A->G | INTERGENIC | None |