Detailed information of SNP:
|
SNP ID:
sf0414212285(Gbrowse)
Chromosome: chr04 Position: 14212285 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.57% | 33.43% |
| All Indica | 798 | 82.46% | 17.54% |
| All Japonica | 497 | 36.02% | 63.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 66.58% | 33.42% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414212285 | A->G | INTERGENIC | None |