Detailed information of SNP:
|
SNP ID:
sf0414219161(Gbrowse)
Chromosome: chr04 Position: 14219161 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.14% | 37.86% |
| All Indica | 794 | 76.32% | 23.68% |
| All Japonica | 496 | 34.48% | 65.52% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 65.68% | 34.32% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414219161 | T->G | INTERGENIC | None |