Detailed information of SNP:
|
SNP ID:
sf0414224493(Gbrowse)
Chromosome: chr04 Position: 14224493 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1155 | 87.19% | 12.81% |
| All Indica | 624 | 85.58% | 14.42% |
| All Japonica | 439 | 89.75% | 10.25% |
| Aus | 52 | 84.62% | 15.38% |
| Indica I | 312 | 86.22% | 13.78% |
| Indica II | 155 | 89.68% | 10.32% |
| Indica Intermediate | 157 | 80.25% | 19.75% |
| Temperate Japonica | 326 | 97.85% | 2.15% |
| Tropical Japonica | 63 | 55.56% | 44.44% |
| Japonica Intermediate | 50 | 80.00% | 20.00% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 30 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414224493 | G->A | INTERGENIC | None |