Detailed information of SNP:
|
SNP ID:
sf0414226361(Gbrowse)
Chromosome: chr04 Position: 14226361 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 54.93% | 45.07% |
| All Indica | 792 | 67.05% | 32.95% |
| All Japonica | 495 | 30.91% | 69.09% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 63.98% | 36.02% |
| Indica II | 211 | 57.35% | 42.65% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 334 | 8.98% | 91.02% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414226361 | T->C | LOC_Os04g24780(LOC_Os04g24780.1) | INTRON |