Detailed information of SNP:
|
SNP ID:
sf0414226459(Gbrowse)
Chromosome: chr04 Position: 14226459 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1301 | 63.57% | 36.43% |
| All Indica | 739 | 58.05% | 41.95% |
| All Japonica | 459 | 78.00% | 22.00% |
| Aus | 53 | 24.53% | 75.47% |
| Indica I | 357 | 54.34% | 45.66% |
| Indica II | 195 | 76.41% | 23.59% |
| Indica Intermediate | 187 | 45.99% | 54.01% |
| Temperate Japonica | 328 | 93.90% | 6.10% |
| Tropical Japonica | 67 | 32.84% | 67.16% |
| Japonica Intermediate | 64 | 43.75% | 56.25% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414226459 | A->G | LOC_Os04g24780(LOC_Os04g24780.1) | INTRON |