Detailed information of SNP:
|
SNP ID:
sf0414227107(Gbrowse)
Chromosome: chr04 Position: 14227107 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 52.76% | 47.24% |
| All Indica | 795 | 64.53% | 35.47% |
| All Japonica | 496 | 26.81% | 73.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 58.18% | 41.82% |
| Indica II | 212 | 58.96% | 41.04% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414227107 | T->C | LOC_Os04g24780(LOC_Os04g24780.1) | Synonymous |