Detailed information of SNP:
|
SNP ID:
sf0414232122(Gbrowse)
Chromosome: chr04 Position: 14232122 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 72.11% | 27.89% |
| All Indica | 786 | 60.18% | 39.82% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 7.69% | 92.31% |
| Indica I | 370 | 82.43% | 17.57% |
| Indica II | 208 | 20.19% | 79.81% |
| Indica Intermediate | 208 | 60.58% | 39.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414232122 | A->T | INTERGENIC | None |