Detailed information of SNP:
|
SNP ID:
sf0414240295(Gbrowse)
Chromosome: chr04 Position: 14240295 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 95.92% | 4.08% |
| All Indica | 767 | 95.70% | 4.30% |
| All Japonica | 486 | 97.12% | 2.88% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 194 | 92.27% | 7.73% |
| Indica Intermediate | 201 | 95.02% | 4.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 85.54% | 14.46% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414240295 | A->T | LOC_Os04g24804(LOC_Os04g24804.1) | INTRON |