Detailed information of SNP:
|
SNP ID:
sf0414266281(Gbrowse)
Chromosome: chr04 Position: 14266281 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 55.36% | 44.64% |
| All Indica | 772 | 71.76% | 28.24% |
| All Japonica | 490 | 22.86% | 77.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 52.78% | 47.22% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 200 | 80.00% | 20.00% |
| Temperate Japonica | 331 | 4.53% | 95.47% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414266281 | T->C | INTERGENIC | None |