Detailed information of SNP:
|
SNP ID:
sf0414271110(Gbrowse)
Chromosome: chr04 Position: 14271110 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 51.43% | 48.57% |
| All Indica | 782 | 32.61% | 67.39% |
| All Japonica | 491 | 74.54% | 25.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 38.46% | 61.54% |
| Indica II | 209 | 38.76% | 61.24% |
| Indica Intermediate | 209 | 16.27% | 83.73% |
| Temperate Japonica | 334 | 93.41% | 6.59% |
| Tropical Japonica | 91 | 19.78% | 80.22% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414271110 | A->T | INTERGENIC | None |