Detailed information of SNP:
|
SNP ID:
sf0414305243(Gbrowse)
Chromosome: chr04 Position: 14305243 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 75.58% | 24.42% |
| All Indica | 772 | 72.41% | 27.59% |
| All Japonica | 487 | 76.59% | 23.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 69.36% | 30.64% |
| Indica II | 209 | 86.12% | 13.88% |
| Indica Intermediate | 204 | 63.73% | 36.27% |
| Temperate Japonica | 331 | 94.86% | 5.14% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 64 | 59.38% | 40.62% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414305243 | C->T | INTERGENIC | None |