Detailed information of SNP:
|
SNP ID:
sf0414306498(Gbrowse)
Chromosome: chr04 Position: 14306498 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1270 | 96.30% | 3.70% |
| All Indica | 675 | 93.93% | 6.07% |
| All Japonica | 476 | 99.79% | 0.21% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 308 | 94.48% | 5.52% |
| Indica II | 196 | 93.88% | 6.12% |
| Indica Intermediate | 171 | 92.98% | 7.02% |
| Temperate Japonica | 326 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414306498 | G->T | INTERGENIC | None |