Detailed information of SNP:
|
SNP ID:
sf0414310291(Gbrowse)
Chromosome: chr04 Position: 14310291 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 84.21% | 15.79% |
| All Indica | 754 | 76.79% | 23.21% |
| All Japonica | 486 | 93.21% | 6.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 343 | 75.51% | 24.49% |
| Indica II | 209 | 87.08% | 12.92% |
| Indica Intermediate | 202 | 68.32% | 31.68% |
| Temperate Japonica | 332 | 96.99% | 3.01% |
| Tropical Japonica | 89 | 88.76% | 11.24% |
| Japonica Intermediate | 65 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414310291 | G->A | INTERGENIC | None |