Detailed information of SNP:
|
SNP ID:
sf0414319958(Gbrowse)
Chromosome: chr04 Position: 14319958 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 79.49% | 20.51% |
| All Indica | 753 | 73.84% | 26.16% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 357 | 82.63% | 17.37% |
| Indica II | 197 | 48.73% | 51.27% |
| Indica Intermediate | 199 | 82.91% | 17.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414319958 | T->C | INTERGENIC | None |