Detailed information of SNP:
|
SNP ID:
sf0414320909(Gbrowse)
Chromosome: chr04 Position: 14320909 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 93.51% | 6.49% |
| All Indica | 753 | 88.98% | 11.02% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 355 | 87.89% | 12.11% |
| Indica II | 195 | 88.72% | 11.28% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414320909 | C->T | LOC_Os04g24860(LOC_Os04g24860.1) | INTRON |