Detailed information of SNP:



SNP ID: sf0414326657(Gbrowse)

Chromosome: chr04

Position: 14326657
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1417 88.29% 11.71%
All Indica798 88.60% 11.40%
All Japonica497 99.60% 0.40%
Aus66 3.03% 96.97%
Indica I375 98.93% 1.07%
Indica II212 62.26% 37.74%
Indica Intermediate211 96.68% 3.32%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0414326657 A->T LOC_Os04g24880(LOC_Os04g24880.1) Non-Synonymous SNP