Detailed information of SNP:
|
SNP ID:
sf0414326657(Gbrowse)
Chromosome: chr04 Position: 14326657 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.29% | 11.71% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 62.26% | 37.74% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414326657 | A->T | LOC_Os04g24880(LOC_Os04g24880.1) | Non-Synonymous SNP |