Detailed information of SNP:
|
SNP ID:
sf0414336750(Gbrowse)
Chromosome: chr04 Position: 14336750 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 70.01% | 29.99% |
| All Indica | 788 | 65.86% | 34.14% |
| All Japonica | 496 | 72.18% | 27.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 61.75% | 38.25% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414336750 | G->A | INTERGENIC | None |