Detailed information of SNP:
|
SNP ID:
sf0414339434(Gbrowse)
Chromosome: chr04 Position: 14339434 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 61.22% | 38.78% |
| All Indica | 769 | 79.19% | 20.81% |
| All Japonica | 480 | 27.92% | 72.08% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 65.49% | 34.51% |
| Indica II | 203 | 94.09% | 5.91% |
| Indica Intermediate | 198 | 89.39% | 10.61% |
| Temperate Japonica | 326 | 7.67% | 92.33% |
| Tropical Japonica | 90 | 81.11% | 18.89% |
| Japonica Intermediate | 64 | 56.25% | 43.75% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414339434 | T->C | INTERGENIC | None |