Detailed information of SNP:
|
SNP ID:
sf0414343755(Gbrowse)
Chromosome: chr04 Position: 14343755 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 66.55% | 33.45% |
| All Indica | 787 | 85.26% | 14.74% |
| All Japonica | 489 | 32.11% | 67.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 75.55% | 24.45% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 332 | 10.24% | 89.76% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 65 | 61.54% | 38.46% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414343755 | C->T | INTERGENIC | None |