Detailed information of SNP:
|
SNP ID:
sf0414360814(Gbrowse)
Chromosome: chr04 Position: 14360814 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 70.94% | 29.06% |
| All Indica | 789 | 89.48% | 10.52% |
| All Japonica | 493 | 37.73% | 62.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 81.15% | 18.85% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 332 | 14.76% | 85.24% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414360814 | T->C | INTERGENIC | None |