Detailed information of SNP:
|
SNP ID:
sf0414362557(Gbrowse)
Chromosome: chr04 Position: 14362557 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 69.78% | 30.22% |
| All Indica | 795 | 87.80% | 12.20% |
| All Japonica | 495 | 36.97% | 63.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 334 | 17.37% | 82.63% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414362557 | C->A | LOC_Os04g24950(LOC_Os04g24950.1) | INTRON |