Detailed information of SNP:
|
SNP ID:
sf0414395441(Gbrowse)
Chromosome: chr04 Position: 14395441 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 77.20% | 22.80% |
| All Indica | 795 | 96.35% | 3.65% |
| All Japonica | 469 | 40.94% | 59.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 315 | 18.73% | 81.27% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414395441 | A->G | INTERGENIC | None |