Detailed information of SNP:
|
SNP ID:
sf0414457132(Gbrowse)
Chromosome: chr04 Position: 14457132 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 77.98% | 22.02% |
| All Indica | 779 | 68.55% | 31.45% |
| All Japonica | 493 | 89.05% | 10.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 63.39% | 36.61% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 201 | 59.20% | 40.80% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414457132 | G->A | INTERGENIC | None |