Detailed information of SNP:
|
SNP ID:
sf0414459517(Gbrowse)
Chromosome: chr04 Position: 14459517 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 78.15% | 21.85% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 496 | 46.77% | 53.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 25.75% | 74.25% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414459517 | A->G | LOC_Os04g25080(LOC_Os04g25080.1) | Non-Synonymous SNP |