Detailed information of SNP:
|
SNP ID:
sf0414466749(Gbrowse)
Chromosome: chr04 Position: 14466749 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 75.43% | 24.57% |
| All Indica | 774 | 94.32% | 5.68% |
| All Japonica | 488 | 41.60% | 58.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 89.64% | 10.36% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 328 | 19.21% | 80.79% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414466749 | A->G | INTERGENIC | None |