Detailed information of SNP:
|
SNP ID:
sf0414473534(Gbrowse)
Chromosome: chr04 Position: 14473534 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 69.34% | 30.66% |
| All Indica | 792 | 93.31% | 6.69% |
| All Japonica | 494 | 26.92% | 73.08% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 332 | 21.69% | 78.31% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414473534 | A->G | INTERGENIC | None |