Detailed information of SNP:
|
SNP ID:
sf0414501283(Gbrowse)
Chromosome: chr04 Position: 14501283 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 62.31% | 37.69% |
| All Indica | 782 | 92.20% | 7.80% |
| All Japonica | 479 | 11.27% | 88.73% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 366 | 92.90% | 7.10% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 328 | 6.40% | 93.60% |
| Tropical Japonica | 87 | 17.24% | 82.76% |
| Japonica Intermediate | 64 | 28.12% | 71.88% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414501283 | A->C | LOC_Os04g25120(LOC_Os04g25120.1) | INTRON |