Detailed information of SNP:
|
SNP ID:
sf0414501289(Gbrowse)
Chromosome: chr04 Position: 14501289 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 62.64% | 37.36% |
| All Indica | 785 | 92.36% | 7.64% |
| All Japonica | 480 | 11.46% | 88.54% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 367 | 92.64% | 7.36% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 330 | 6.97% | 93.03% |
| Tropical Japonica | 86 | 16.28% | 83.72% |
| Japonica Intermediate | 64 | 28.12% | 71.88% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414501289 | A->G | LOC_Os04g25120(LOC_Os04g25120.1) | INTRON |