Detailed information of SNP:
|
SNP ID:
sf0414509092(Gbrowse)
Chromosome: chr04 Position: 14509092 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 77.23% | 22.77% |
| All Indica | 784 | 68.75% | 31.25% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 371 | 83.29% | 16.71% |
| Indica II | 209 | 40.19% | 59.81% |
| Indica Intermediate | 204 | 71.57% | 28.43% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414509092 | A->G | INTERGENIC | None |