Detailed information of SNP:
|
SNP ID:
sf0414515030(Gbrowse)
Chromosome: chr04 Position: 14515030 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 70.63% | 29.37% |
| All Indica | 791 | 65.61% | 34.39% |
| All Japonica | 483 | 73.91% | 26.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 60.48% | 39.52% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 207 | 54.11% | 45.89% |
| Temperate Japonica | 334 | 93.41% | 6.59% |
| Tropical Japonica | 83 | 14.46% | 85.54% |
| Japonica Intermediate | 66 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414515030 | C->T | INTERGENIC | None |