Detailed information of SNP:
SNP ID:
sf0414531646(Gbrowse)
Chromosome: chr04 Position: 14531646 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 80.25% | 19.75% |
All Indica | 799 | 99.25% | 0.75% |
All Japonica | 496 | 46.37% | 53.63% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.47% | 0.53% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 334 | 25.15% | 74.85% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 76.47% | 23.53% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0414531646 | T->G | INTERGENIC | None |