Detailed information of SNP:
|
SNP ID:
sf0414537267(Gbrowse)
Chromosome: chr04 Position: 14537267 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 76.13% | 23.87% |
| All Indica | 783 | 93.74% | 6.26% |
| All Japonica | 491 | 45.42% | 54.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 360 | 88.89% | 11.11% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 329 | 23.71% | 76.29% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414537267 | A->G | INTERGENIC | None |