Detailed information of SNP:



SNP ID: sf0414539712(Gbrowse)

Chromosome: chr04

Position: 14539712
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1407 68.80% 31.20%
All Indica788 63.71% 36.29%
All Japonica496 71.37% 28.63%
Aus67 100.00% 0.00%
Indica I367 60.22% 39.78%
Indica II213 82.63% 17.37%
Indica Intermediate208 50.48% 49.52%
Temperate Japonica335 93.13% 6.87%
Tropical Japonica94 9.57% 90.43%
Japonica Intermediate67 49.25% 50.75%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0414539712 G->T INTERGENIC None