Detailed information of SNP:
|
SNP ID:
sf0414539712(Gbrowse)
Chromosome: chr04 Position: 14539712 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 68.80% | 31.20% |
| All Indica | 788 | 63.71% | 36.29% |
| All Japonica | 496 | 71.37% | 28.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 60.22% | 39.78% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 208 | 50.48% | 49.52% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414539712 | G->T | INTERGENIC | None |