Detailed information of SNP:
|
SNP ID:
sf0414542465(Gbrowse)
Chromosome: chr04 Position: 14542465 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 63.44% | 36.56% |
| All Indica | 787 | 56.93% | 43.07% |
| All Japonica | 493 | 83.37% | 16.63% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 370 | 73.78% | 26.22% |
| Indica II | 207 | 23.19% | 76.81% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414542465 | G->A | INTERGENIC | None |