Detailed information of SNP:
|
SNP ID:
sf0414545454(Gbrowse)
Chromosome: chr04 Position: 14545454 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1204 | 69.77% | 30.23% |
| All Indica | 593 | 85.16% | 14.84% |
| All Japonica | 497 | 61.17% | 38.83% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 300 | 99.67% | 0.33% |
| Indica II | 140 | 43.57% | 56.43% |
| Indica Intermediate | 153 | 94.77% | 5.23% |
| Temperate Japonica | 335 | 68.66% | 31.34% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 33 | 57.58% | 42.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414545454 | T->G | INTERGENIC | None |