Detailed information of SNP:
|
SNP ID:
sf0414563914(Gbrowse)
Chromosome: chr04 Position: 14563914 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 67.67% | 32.33% |
| All Indica | 778 | 55.40% | 44.60% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 364 | 70.05% | 29.95% |
| Indica II | 205 | 24.88% | 75.12% |
| Indica Intermediate | 209 | 59.81% | 40.19% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414563914 | T->C | INTERGENIC | None |