Detailed information of SNP:
|
SNP ID:
sf0414570345(Gbrowse)
Chromosome: chr04 Position: 14570345 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 75.14% | 24.86% |
| All Indica | 784 | 65.82% | 34.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 368 | 79.35% | 20.65% |
| Indica II | 209 | 36.84% | 63.16% |
| Indica Intermediate | 207 | 71.01% | 28.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414570345 | A->T | INTERGENIC | None |