Detailed information of SNP:
|
SNP ID:
sf0414573453(Gbrowse)
Chromosome: chr04 Position: 14573453 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 87.86% | 12.14% |
| All Indica | 774 | 79.20% | 20.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 88.25% | 11.75% |
| Indica II | 203 | 70.94% | 29.06% |
| Indica Intermediate | 205 | 71.22% | 28.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414573453 | G->A | INTERGENIC | None |