Detailed information of SNP:
|
SNP ID:
sf0414574099(Gbrowse)
Chromosome: chr04 Position: 14574099 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 72.69% | 27.31% |
| All Indica | 792 | 77.02% | 22.98% |
| All Japonica | 492 | 76.42% | 23.58% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 368 | 78.26% | 21.74% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 331 | 92.45% | 7.55% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414574099 | T->C | INTERGENIC | None |