Detailed information of SNP:
|
SNP ID:
sf0414578342(Gbrowse)
Chromosome: chr04 Position: 14578342 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1224 | 90.69% | 9.31% |
| All Indica | 703 | 85.92% | 14.08% |
| All Japonica | 405 | 97.28% | 2.72% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 327 | 80.73% | 19.27% |
| Indica II | 189 | 94.18% | 5.82% |
| Indica Intermediate | 187 | 86.63% | 13.37% |
| Temperate Japonica | 305 | 98.36% | 1.64% |
| Tropical Japonica | 48 | 89.58% | 10.42% |
| Japonica Intermediate | 52 | 98.08% | 1.92% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414578342 | A->T | LOC_Os04g25230(LOC_Os04g25230.1) | INTRON |