Detailed information of SNP:
|
SNP ID:
sf0414578798(Gbrowse)
Chromosome: chr04 Position: 14578798 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1268 | 55.60% | 44.40% |
| All Indica | 757 | 57.73% | 42.27% |
| All Japonica | 395 | 60.00% | 40.00% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 355 | 55.77% | 44.23% |
| Indica II | 199 | 37.69% | 62.31% |
| Indica Intermediate | 203 | 80.79% | 19.21% |
| Temperate Japonica | 245 | 73.47% | 26.53% |
| Tropical Japonica | 91 | 23.08% | 76.92% |
| Japonica Intermediate | 59 | 61.02% | 38.98% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414578798 | T->G | LOC_Os04g25230(LOC_Os04g25230.1) | Non-Synonymous SNP |