Detailed information of SNP:
SNP ID:
sf0414587225(Gbrowse)
Chromosome: chr04 Position: 14587225 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1415 | 99.15% | 0.85% |
All Indica | 799 | 99.87% | 0.13% |
All Japonica | 494 | 97.77% | 2.23% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 332 | 99.40% | 0.60% |
Tropical Japonica | 94 | 92.55% | 7.45% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 13 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0414587225 | A->G | INTERGENIC | None |