Detailed information of SNP:
|
SNP ID:
sf0414601749(Gbrowse)
Chromosome: chr04 Position: 14601749 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 74.62% | 25.38% |
| All Indica | 798 | 83.08% | 16.92% |
| All Japonica | 476 | 56.30% | 43.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 321 | 62.62% | 37.38% |
| Tropical Japonica | 87 | 32.18% | 67.82% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0414601749 | C->T | LOC_Os04g25280(LOC_Os04g25280.1) | INTRON |